Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs78502410 chr1:227414167 C/G 0 404 14.27 14.15 1.48 KM Plot
STAD rs78720247 chr1:227521432 G/A 0 402 14.27 14.15 0.27 KM Plot
STAD rs78741918 chr17:29018499 AAT/A 1.49E-5 405 14.2 16.53 9.8 KM Plot
STAD rs78834956 chr1:227390207 A/G 0 405 14.27 14.23 1.48 KM Plot
STAD rs78922783 chr7:148940637 C/T 5.13E-5 403 14.2 15.87 3.43 KM Plot
STAD rs79007956 chr7:148934529 C/T 5.19E-5 398 14.32 12.17 3.43 KM Plot
STAD rs7902291 chr10:95492785 C/G 2.73E-5 404 14.13 17.98 6.1 KM Plot
STAD rs79032702 chr7:20642198 G/A 1.11E-16 398 14.07 15.87 0.8 KM Plot
STAD rs79046754 chr1:227339211 G/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs79447549 chr7:2066443 A/G 2.3E-10 386 14.02 15.65 0.52 KM Plot
STAD rs79463640 chr1:227313894 C/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs79621888 chr7:20641635 C/T 1.11E-16 396 14.07 15.7 0.8 KM Plot
STAD rs79626494 chr1:227296110 G/GTTT 0 404 14.37 14.07 1.48 KM Plot
STAD rs79750876 chr17:41710104 C/T 2.28E-13 405 14.22 20.02 3.43 KM Plot
STAD rs79798419 chr1:227399294 T/A 0 405 14.27 14.23 1.48 KM Plot